Naturally It's Clean vs standard enzyme cleaners

Smell gone or masked? Skip the artificial fragrance.

By the Clean Fluff Club team · Hosted by Rusty. Updated October 12, 2026. Picked by what's in it.

  1. Our pick

    Naturally It's Clean Carpet Upholstery Cleaner

    Best for: Fresh pee on carpet and couches

    The catch: Old stains need a few rounds.

    Skip it if: The stain is old and set in, and needs a longer soak.

    What's in it: plant-based enzymes, per the maker, made for fresh pee instead of a cover-up. Source: Listing

  2. Rocco & Roxie Professional Strength Enzyme Cleaner

    Best for: Old, dried cat or dog pee on carpet

    The catch: Old stain? Soak it at bedtime and let it work overnight.

    What's in it: chlorine-free and color-safe, so colored carpet is on the table. Source: Listing

    Check price at Amazon
A curious purple puppy looks up at two cleaners on a side table: a green bottle with a leaf label and a blue spray bottle.
In this guide

Short answer: Naturally It's Clean wins on fresh pee and for homes that want no artificial perfume (the maker says it has no artificial fragrances). A standard enzyme cleaner like Rocco & Roxie wins on set-in stains. Any good enzyme cleaner needs a full soak and a second round on a big old stain.

Here's how they stack up on the messes that matter.

In the ring: plant-based vs standard

Naturally It's Clean

  • Plant-based enzyme formula
  • No dyes, artificial fragrances, or harsh chemicals
  • Works on carpet, upholstery, and drapes

Standard Enzyme Cleaners

We compared it with three popular options: Nature's Miracle, Rocco & Roxie, and a generic store-brand enzyme spray.

Rocco & Roxie Professional Strength Enzyme Cleaner

Also great

Rocco & Roxie Professional Strength

Best for: Old, dried cat or dog pee on carpet

How we compared them

We sorted them by the four stains owners deal with most:

  • Fresh stains (cleaned within 10 minutes)
  • Day-old stains
  • Week-old set-in stains
  • Double-layer stains (accidents on top of old accidents)

For each one, two questions: is the smell gone or just masked, and does the cleaner's own scent linger? All four use the same method: soak the spot, give the enzymes time, and let it air dry.

What the labels and owner reports show

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Fresh Stains

Edge: Even

Any enzyme cleaner handles a fresh spot when it reaches as deep as the pee did. Blot first, then soak. Most failed fresh-stain reviews describe a light mist that never reached the pad.

Day-Old Stains

Edge: Naturally It's Clean (slight)

The formulas work the same way, so the edge here is about checking your work. With no perfume on top, a day-old spot either smells clean after it dries or it does not, and you know to treat it again.

Week-Old Set-In Stains

Edge: Even (plan on more than one round)

No enzyme cleaner promises a one-pass fix on a week-old stain. What works: soak to the pad, cover the spot so it stays wet, and repeat after it dries. Generic sprays draw more "smell came back" complaints, often from lighter application.

Odor Elimination

Edge: Naturally It's Clean

This is where skipping artificial perfume earns its place. Nature's Miracle's current formula draws steady owner complaints that its perfume lingers for days, which makes it hard to tell if the urine smell is gone. Rocco & Roxie's scent is lighter but still noted. Naturally It's Clean has no heavy perfume on top, so a pee smell it missed is easier to notice.

Pros and Cons

Naturally It's Clean: pros

  • No artificial fragrances (easier to verify it's working)
  • Enzymes the maker calls plant-based
  • Effective on upholstery and drapes (not just carpet)
  • No dyes to stain light fabrics

Naturally It's Clean: cons

  • Less widely available in stores (mostly online)
  • Requires same patience as any enzyme cleaner (no instant results)

Standard enzyme cleaners: pros

  • Widely available in stores
  • Some come with attachments for upholstery

Standard enzyme cleaners: cons

  • Fragrances can mask rather than eliminate odors
  • Some contain dyes that can stain
  • Quality varies significantly between brands

Which should you choose?

Choose Naturally It's Clean if:

  • You want a cleaner without artificial fragrance
  • You're concerned about chemicals around pets/kids
  • You need to clean upholstery or drapes
  • You want to be sure the odor is actually gone

→ Get Naturally It's Clean on Amazon

Choose standard enzyme cleaners if:

  • You need something available at local stores today
  • You want a familiar enzyme formula off the shelf
  • You prefer a scented product

Our Verdict

For homes that want no artificial fragrance, Naturally It's Clean is our top pick, and the maker calls its enzymes plant-based. On paper it does the same job as conventional enzyme cleaners, and the lack of perfume makes it easier to confirm the smell is gone.

The catch: it is mostly sold online, and it asks for the same patience as any enzyme cleaner. Skip it if you want a scented product, or if you need a bottle from a local store today.

Naturally It's Clean earns our recommendation.

→ Try Naturally It's Clean for fabric and carpet spots.

Your next move

Still deciding? Get this one.

Naturally It's Clean Carpet Upholstery Cleaner
Naturally It's Clean Carpet Upholstery Cleaner

Best for: Fresh pee on carpet and couches

Read the Naturally It's Clean Carpet Upholstery review

Still fighting this mess?

Every pick for odor and stain cleanup, side by side.

Each pick is matched to one job, with its catch up front and who should skip it.