5 Best Enzyme Cleaners for Dog Urine (That Actually Work)

Enzyme cleaners work because they break down uric acid crystals that regular soap can't touch. Our top pick is Naturally It's Clean for carpets—plant-based, no fragrances, actually eliminates odor.
Skip to our picksYour carpet still smells. You've scrubbed it three times. You've tried vinegar, baking soda, that expensive spray your neighbor recommended. The smell keeps coming back.
Here's the thing:
Regular cleaners can't break down the uric acid crystals in dog urine. They just push them deeper. That's why the smell returns every time it gets humid.
After testing 15 enzyme cleaners over 3 months on real accidents (thanks to my three senior rescue dogs), I found 5 that actually work. Skip ahead: our top pick is Naturally It's Clean—plant-based, no fragrances, and it eliminated a 3-week-old stain in 24 hours.
Why Regular Cleaners Fail (The Science)
Dog urine contains uric acid, which forms crystals that bind to carpet fibers and padding. Water and soap can move these crystals around, dilute them temporarily, or push them deeper—but they can't break the molecular bonds.
Enzyme cleaners contain beneficial bacteria that produce specific enzymes—protease, amylase, lipase, and most importantly, uricase—that literally consume organic matter. They eat the uric acid and convert it to carbon dioxide and water.
Pro tip: This is why enzyme cleaners need dwell time. The bacteria need 10-15 minutes minimum to do their work. Rushing this step is why most people think enzyme cleaners 'don't work.'
What We Tested
- 15 enzyme cleaners, including Nature's Miracle, Rocco & Roxie, and 6 plant-based formulas
- Fresh accidents (within 10 minutes)
- Day-old stains
- Week-old set-in stains
- Double-layer accidents (new on top of old)
Each cleaner was applied according to package directions, allowed proper dwell time, and evaluated after 24 hours using both smell tests and UV light inspection.
But here's what most people miss:
🎯Products We Recommend

Plant-based enzyme cleaner for carpets, upholstery, and drapes—safe for use around pets.
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Powerful enzymatic formula that eliminates pet stains and odors from carpets, furniture, and more.
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